PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g032700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 1015aa    MW: 115085 Da    PI: 8.5397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g032700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-10196241454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h + E++RR +  ++f+ Lr+l+P++      K++ a+i   A+ YI++L
  Sopen01g032700.1 196 KHHASEKQRRVHFSDKFQALRTLIPNP-----SKNDRATIIADAIGYINEL 241
                       7999**********************9.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.167192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-13195262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-7196242No hitNo description
Gene3DG3DSA:4.10.280.103.3E-13196263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7196241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-6198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525405.46E-21645705IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.2E-27646833IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525405.46E-21732882IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:1.10.8.601.4E-14835893No hitNo description
SuperFamilySSF480199.69E-8895958IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
Gene3DG3DSA:1.20.272.104.4E-138971003No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MYASQSLSFH PTSVQQDEKS FVQNHIAASG LVELQQQQQQ FHSSENNLNM QLEFGHDSNN  60
TRFHPNWEEI SFNPYNNQQL SYPISNPSLG LLGGFHQRTE LASTSTNLFY EPPQLNMPLN  120
LCTPQSSLFK ELFHLSPHGS SYGLGSSGTG SLFSHGHDQE EVTGNLYHDG SFHELTGDMM  180
INSAAIKKRE LGKDIKHHAS EKQRRVHFSD KFQALRTLIP NPSKNDRATI IADAIGYINE  240
LKMRVNELKV QVDIKKERIK RQRSIVEEYG AVIMEDNQDD QQVMMNKSTN WHHQIKSSKN  300
SNTEVDVRIM EDEVIVKFVQ HKQMLKGVNC LLVVSKALDE LQLDLQHVAG GLIGDHYSYL  360
LNSKICEGCT VISETQNVRS TNSDDSLKPS WHKKIDEERK RGSSSSKNSR SKNNLDEFNK  420
RNAIQEEKRY SARSPYYKGL TDSSKEINRQ KSLAGSTPGK DSSLSSSSTS NSSKSNLAIK  480
VQEWSASYFV RKGKEERASS SFLNVSSGNK NIRDPSSSET KVIRTTIGEE LGIHSKGVRR  540
RSKSRISQLD QGKPLRERAS EMQTNNIVLL PAAPAPAPPV TSPTKLSVPS PPPTPLILQT  600
SRDEEIESVQ LPLPGSPTQN VDDEKDTTNV KDTTVPEEQI DKRFTWADKY RPNALKHFLC  660
NRNIALELKA LAETDSSIRH FIFAGLPGVG KRTMIFALLR EIYGHDKLQA RDKCKVFHLK  720
GESVPSIKVN VKESNKHVEI NLSETKGYEK HVLVQLIKER KHKSSSRSAP SNPDHNCKAI  780
ILGEADKLST DALLYIKWMI ERYEGCYKVF FCCSDSTKLQ PIKSICKVFH LQKPSDDEIV  840
DVLKFIAQQE GIELPHQMAA RIASNSKSNL RQAIRSFEAT WHFNTSLTEN QEIKTGWEDD  900
IAEIAKNIIE EQSPKQLYDI RGKLQNLIEH NVSAEFIFNT VFEELKSNLD DQFHKEMDIL  960
KLKYNINSND VEQGKSDNDA VKKIVHKFMK IEEFTAKFMS WYKIFVLKKG NQNPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sxj_E9e-276469514309Activator 1 40 kDa subunit
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081249.10.0PREDICTED: replication factor C subunit 3-like
TrEMBLK4AY000.0K4AY00_SOLLC; Uncharacterized protein
STRINGSolyc01g081080.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.24e-38bHLH family protein